General Goal: To know how to diagnose pneumonia.
Specific Educational Objectives: The student should be able to:
1. describe how one determines a person has pneumonia. Know the common causes pneumonia based on a person's age, where or how they acquire the pneumonia, and based on when signs and symptoms of pneumonia begin (acute, subacute, chronic).
2. describe the differences between typical and atypical pneumonia.
3. know why on examination of a smear of sputum the laboratory will reject some samples as saliva and not sputum.
4. if necessary know how to get a definitive diagnosis.
5. describe how some pneumonias can be prevented.
Reading: Mosby's Color Atlas and Text of Infectious Diseases by Christopher P. Conlon and David R. Snydman. pp. 67-76.Lecture: Dr. Neal R. Chamberlain
References:
Lower respiratory tract infections cause disease in the alveolar sacs, and the resulting infections are called pneumonia. This section of the handout will discuss the various types of pneumonia (i.e., typical, interstitial, chronic, and fungal pneumonia) and the agents that cause them.
Pneumonia is an infection of the alveoli or the walls of the alveolar sacs. Diagnosis of pneumonia is relatively straightforward; however, since so many microorganisms can cause pneumonia, determining the cause of a patient’s pneumonia can be very difficult.
Numerous microorganisms can cause pneumonia, but most cases are caused by bacteria. The common causes of pneumonia are dependent on the immune status of the patient, the location where the patient acquired the pneumonia, the age of the patient, and the type of pneumonia the patient manifests (e.g., typical versus interstitial pneumonia). The clinical and epidemiologic factors are used to determine the most likely cause of each individual case of pneumonia. Table LRI-1 lists causes of pneumonia by age of the patient; Table LRI-2 lists the causes of pneumonia according to the location where the disease was acquired and the immune status of the patient; Table LRI-3 lists causes of pneumonia acquired from unusual exposure; and Table LRI-4 lists causes of pneumonia by time of onset and where acquired; and Table LRI-5 lists the most common cause of various types of pneumonia diagnosed in the U.S.
Table LRI-1. Common Causes of Pneumonia Listed by Patient Age |
|
Age |
Most Likely Organisms |
Neonatal (0–1 month) |
Escherichia coli, Streptococcus agalactiae (group B) |
Infants (1–6 months) |
Chlamydia trachomatis, respiratory syncytial virus |
Children (6 months–5 years) |
Respiratory syncytial virus, parainfluenza viruses |
Children (5–15 years) |
Mycoplasma pneumoniae, influenza virus type A |
Young adults (16–30 years) |
Mycoplasma pneumoniae, Streptococcus pneumoniae |
Older adults |
Streptococcus pneumoniae, Haemophilus influenzae |
Table LRI-2. Pneumonia Listed by Location Where Disease Was Acquired or by the Immune Status of the Patient and the Causes of that Pneumonia |
||||
Location or Patient’s Immune Status |
Most Common Causes |
Infrequent Causes |
||
Community acquired typical pneumonia |
Streptococcus pneumoniae, Haemophilus influenzae, Klebsiella pneumoniae |
Staphylococcus, Moraxella catarrhalis, Neisseria meningitidis |
||
Nosocomial pneumonia typical pneumonia |
Gram-negative aerobic bacilli (Enterobacter, Klebsiella, Acinetobacter, Pseudomonas), Staphylococcus aureus, anaerobic bacteria, standard bacteria* |
Legionella, Streptococcus pneumoniae |
||
Community acquired primary interstitial pneumonia |
Mycoplasma pneumoniae, respiratory viruses†, influenza virus, Chlamydophila pneumoniae, Legionella sp. |
Adenovirus, Chlamydophila psittaci, Chlamydia trachomatis, primary tuberculosis, acute fungal pneumonias |
||
Hematogenous pneumonia |
Staphylococcus, Streptococcus |
Gram-negative aerobic bacilli |
||
Opportunistic pneumonia occurring in immunocompromised host |
Standard bacteria*, Pneumocystis jirovecii, Cytomegalovirus, herpes simplex virus, Nocardia, opportunistic fungi (e.g., Candida, Phycomycetes mucor, Aspergillus) |
Legionella, Listeria, Histoplasma, Coccidioides |
||
Pneumonia acquired by environmental exposure |
Histoplasma capsulatum, Coccidioides immitis, Chlamydophila psittaci, Mycobacterium tuberculosis |
Burkholderia mallei, Burkholderia pseudomallei Coxiella burnetii, Yersinia pestis, Pasteurella multocida, Paracoccidioides |
||
Aspiration pneumonia |
Prevotella melaninogenicus, Fusobacterium nucleatum, Peptostreptococcus, Peptococcus, and other anaerobes, Staphylococcus, Gram-negative aerobic bacilli |
|||
* Standard bacteria refer to the bacteria that commonly cause community-acquired pneumonias. † Respiratory viruses include influenza, parainfluenza, and respiratory syncytial virus.
Table LRI-3. Disease, Causative Agent, and Environmental Source of the Patient’s Disease |
||
Disease |
Causative Agent |
Source |
Psittacosis (parrot fever) |
Chlamydophila psittaci |
Infected birds |
Q fever |
Coxiella burnetii |
Contact with placenta of cattle, sheep, and goats; consumption of unpasteurized milk |
Histoplasmosis |
Histoplasma capsulatum |
Soil contaminated by starling, chicken, and batexcreta (Ohio and Mississippi river valleys) |
Coccidioidomycosis |
Coccidioides immitis or Coccidioides posadasii |
Soil in Southwestern United States |
Cryptococcosis |
Cryptococcus neoformans |
Pigeon excreta and debris |
Plague |
Yersinia pestis |
Contact with wild prairie dogs and infected pets; flea bites; person to person |
Melioidosis |
Burkholderia pseudomallei |
Soil |
Tularemia |
Francisella tularensis |
Ticks and deerflies; following aerosolization of dead infected animal carcasses by lawn mowers and string weed cutters |
| Table LRI-4. Causes of Pneumonia by Time of Onset, Where Acquired and Transmission |
|||
Time of onset |
Location pneumonia was acquired |
Transmission |
Causative agents |
Acute |
Community acquired |
Person-to-person |
Streptococcus pneumoniae, Mycoplasma pneumoniae, Haemophilus influenzae, Staphylococcus aureus, Klebsiella pneumoniae, Neisseria meningitidis, Moraxella catarrhalis, influenza virus, Streptococcus pyogenes |
Acute |
Community acquired |
Animal or environmental exposure |
Legionella, Francisella tularensis, Coxiella burnetii, Chlamydophila psittaci, Yersinia pestis (plague), Bacillus anthracis (anthrax), Burkholderia pseudomallei (melioidosis), Pasteurella multocida (pasteurellosis) |
Acute |
Community acquired |
Person to person in infants and young children |
Chlamydia trachomatis (an afebrile pneumonia), respiratory syncytial virus and other respiratory viruses, Streptococcus agalactiae (Group B), S aureus, Cytomegalovirus, S pneumoniae, H influenza |
Acute |
Nosocomial pneumonia |
Person to person |
Enterobacteriaceae, Pseudomonas aeruginosa, Acinetobacter calcoaceticus, S aureus |
Subacute interstitial |
Community acquired |
Person to person |
Mycoplasma pneumoniae, influenza virus |
Subacute |
Nosocomial or community acquired |
Aspiration |
Mixed anaerobic and aerobic gram-negative enteric bacteria, are usually polymicrobial |
Subacute or chronic |
Nosocomial or community acquired |
Person to person or aspiration in the immunocompromised |
Pneumocystis jiroveci, cytomegalovirus, atypical mycobacterium (e.g., Mycobacterium kansasii), Nocardia, Aspergillus, Phycomycetes mucor, Candida albicans |
Chronic |
Community acquired |
Person to person |
Mycobacterium tuberculosis, most common cause of chronic pneumonia. Blastomyces dermatitides (most common of cause of fungal pneumonia), Histoplasma capsulatum, Coccidioides immitis, Coccidioides posadasii, Cryptococcus neoformans |
Table LRI-5. Common Causes of Types of Pneumonia and Important Laboratory Findings |
||
Type of pneumonia |
Most Common Cause |
Important Laboratory Findings |
Typical |
Streptococcus pneumoniae |
Gram-positive diplococcus (lancet-shaped diplococcus), alpha hemolytic sensitive to Optochin antibiotic |
Interstitial (atypical) |
Mycoplasma pneumoniae |
No cell wall and cannot be Gram stained; fried-egg appearance on growth medium |
Chronic |
Mycobacterium tuberculosis |
Acid-fast positive rod-shaped |
Fungal |
Blastomyces dermatitidis |
Broad-based budding yeast |
Aspiration (community acquired) |
Oral anaerobes or Streptococcus pneumoniae |
Anaerobes can include Prevotella, Peptostreptococcus, Bacteroides, Fusobacterium |
Aspiration (hospital acquired) |
Oral anaerobes, gram-negative enterics, or Staphylococcus aureus |
Anaerobes same as above; gram-negative enterics can include Klebsiella pneumoniae and Escherichia coli |
Many patients who are diagnosed with pneumonia mention having previous flu-like symptoms or an upper respiratory tract infection. A patient with pneumonia will frequently continue to have symptoms of upper respiratory tract infection and develop respiratory symptoms that are indicative of a lower respiratory tract infection—cough, dyspnea, sputum production, and tachycardia. Pneumonia is even more likely to be the diagnosis if the patient also has a fever (an exception is neonates who are diagnosed with afebrile Chlamydia trachomatis pneumonia) and auscultatory findings that may include abnormal breath sounds, dullness to percussion, wheezes, and crackles (rales).
Pneumonias can be classified based on how rapid the pneumonia manifests. Acute onset pneumonias develop within 24–48 hours and are common in patients with typical pneumonia. The patient’s only complaint may be an upper respiratory infection but manifestations of typical pneumonia rapidly develop—high fever, shaking chills, dyspnea, tachycardia, productive cough with purulent sputum production, toxic facies, and consolidations in the lungs as seen on chest radiographs (Table LRI-6).
Interstitial pneumonia (atypical pneumonia) has a subacute onset; it may take several days to 1 week before the patient develops signs and symptoms of pneumonia—low-grade fever, chills, paroxysmal cough with mucoid sputum or no sputum production, well-appearing facies, and infiltrates in the lungs as seen on chest radiographs (Table LRI-6).
Table URI-6. Comparison of Typical and Interstitial (Atypical) Pneumonias |
||
Feature |
Typical Pneumonia |
Interstitial (Atypical) Pneumonia |
Onset |
Sudden |
Gradual |
Rigors |
Single chill |
“Chilliness” |
Facies |
“Toxic” |
Well |
Cough |
Productive |
Nonproductive: paroxysmal |
Sputum |
Purulent (bloody) |
Mucoid |
Temperature |
103–104°F |
< 103°F |
Pleurisy |
Frequent |
Rare |
Consolidation |
Frequent |
Rare |
Gram stain (sputum) |
Neutrophils |
Mononuclear cells |
White blood cell count and differential count |
> 15,000/mm3 with left shift |
> 15,000/mm3 |
Chest radiograph |
Defined density, lobar pneumonia |
Nondefined infiltrate or interstitial pneumonia |
Most common cause |
Streptococcus pneumoniae |
Mycoplasma pneumoniae |
Chronic pneumonias can take several weeks to 1 month for symptoms to fully develop. Patients usually present with a history of night sweats, low-grade fever, significant weight loss, productive cough with purulent sputum production, and dyspnea; coin lesions (Ghon focus) in the lungs are seen on chest radiographs.
Symptoms of aspiration pneumonia are similar to other acute onset pneumonias, except patients experience recurrent chills rather than a shaking chill, and consolidations in the dependent lung segments are seen on chest radiographs. About one half of patients with aspiration pneumonia will produce foul-smelling sputum.
Some causes of pneumonia that result in unique signs and symptoms
There are no resident bacteria in the lower respiratory tract. The two most common means of acquiring a lower respiratory tract infection is by inhalation and aspiration. Organisms that enter the alveoli are eliminated by alveolar macrophages. Alveolar macrophages are the most important means of eliminating organisms that get in the alveoli after escaping the defense mechanisms in the upper respiratory tract and the respiratory airways.
Once a microorganism enters the alveoli, it can be opsonized by IgG in the fluid lining the alveoli and then be ingested by the macrophage via their Fc receptors.
Many bacteria that cause pneumonia can initially survive in the alveoli due to the following defense mechanisms.
If the organisms survive in the alveoli, microbial growth can cause tissue injury, which stimulates the host to mount an inflammatory response. Tissue injury can occur due to exotoxins produced by a bacterium, cell lysis caused by a virus, or death of alveolar macrophages and dumping of their lysosomal contents in the alveoli due to growth of an organism in the phagocyte. Vascular permeability increases, and PMNs arrive at the area with many of the serum components, attempting to contain and eliminate the organisms. While the microorganisms are damaging the alveoli, other alveolar macrophages are being recruited to the area of inflammation. Lymphoid tissue associated with the lungs (mediastinal lymph nodes) becomes enlarged following activation of the B and T lymphocytes. Chest radiographs may show evidence of mediastinal lymph node enlargement in the patient with pneumonia.
The accumulation of microorganisms, immune cells, and serum components can cause the alveoli to fill and spread to other alveoli that are in close proximity. This inflammatory response is described as an opacity or a consolidation seen on a chest radiograph, and is often seen in patients with pneumonia caused by S pneumoniae—this type of pneumonia is called typical or lobar pneumonia. The inflammatory response to the infection and the microorganisms produce factors that allow the microorganisms to leave the lung and exert systemic effects such as fever. Examples of microbial factors that can have systemic effects include endotoxin from gram-negative bacteria resulting in fever and septic shock, and cell wall components of gram-positive bacteria that can lead to fever and septic shock.
Organisms such as M pneumoniae and the influenza virus initially do not cause a large amount of fluid to accumulate in the alveoli. However, following infection with these organisms, inflammation of the interstitial spaces (walls of the alveoli) occurs, resulting in interstitial or atypical pneumonia. Chest radiographs of patients with this type of pneumonia show fine granular diffuse infiltrates.
Other organisms such as Staphylococcus aureus, gram-negative rod-shaped bacteria, and anaerobic bacteria produce abscesses or microabscesses. In these infections the immune system can wall off the organisms and produce localized abscesses or microabscesses that usually show well-defined circular lesions with necrotic translucent centers on chest radiographs.
Patients with pneumonia may present with chest discomfort, cough (productive or nonproductive paroxysmal cough), rigors (patients with typical pneumonia) or chills (patients with interstitial pneumonia), shortness of breath, and fever. Physical examination may reveal increases in respiratory rate and heart rate and dullness to percussion over affected regions of the lungs and rales.
Chest radiographs showing new consolidations or infiltrates are definitive in helping to establish a diagnosis of pneumonia. When alveolar sacs fill with inflammatory cells and fluid, the chest radiograph will show consolidated well-defined densities that are unilateral (inhalation or aspiration pneumonia), bilateral (hematogenous spread to lungs), localized, or uniform. When a chest radiograph shows inflammation and thickening of the alveolar septa that surround the alveoli, rather than a filling of the alveolar sacs with inflammatory material, the diagnosis is more likely to be interstitial pneumonia.
Some organisms form abscesses in the lung (e.g., Staphylococcus aureus, Enterobacteriaceae, Pseudomonas aeruginosa, and anaerobic organisms) and in such cases, a chest radiograph is useful in revealing abscess formation. If present, certain classic radiologic patterns may be of diagnostic value; for example,
Klebsiella pneumoniae infection causing an upper lobar consolidation can result in a bowing fissure (“bulging fissure” sign).
Staphylococcus aureus infections of the lung can cause multiple bilateral nodular infiltrates with central cavitation. In children, the chest radiograph may show ill-defined, thin walled cavities (“pneumatoceles”), bronchopleural fistulas, and empyema.
Pseudomonas aeruginosa infections can result in microabscesses, which may coalesce into large abscesses.
Gram-negative rod infections (e.g., Klebsiella, Proteus, E coli) often cause lung necrosis.
Mycobacterium tuberculosis pneumonia can cause coin lesions.
Consolidations in the dependent lung segments may indicate aspiration pneumonia.
To identify the specific pathogen that is causing the pneumonia, clinical and epidemiologic data must be considered to limit the number of possible causes of the pneumonia (see Tables LRI-1 through LRI-4, and TablesLRI-6 and LRI-7).
Table LRI-7. Pneumonia Patient’s Condition or Circumstance and the Most Common Causative Agents |
|
Condition or Circumstance |
Common causative agents |
Cystic fibrosis |
Pseudomonas aeruginosa or Staphylococcus aureus |
Alchohol abuser |
Klebsiella pneumoniae or oral anaerobic bacteria (e.g., Prevotella, Bacteroides, Peptostreptococcus, Fusobacterium) |
Nursing home resident with underlying cardiopulmonary disease; recent antibiotic therapy; or multiple medical comorbidities |
Enteric gram-negative bacteria (Enterobacter, Klebsiella pneumoniae, Escherichia coli) |
Chronic obstructive pulmonary disease; alcohol abuser; elderly |
Haemophilus influenzae and Klebsiella pneumoniae |
Intravenous drug user |
Staphylococcus aureus |
Elderly; recent influenza virus infection |
Staphylococcus aureus |
Military recruits at basic training camp; college students living in dormitories |
Neisseria meningitidis |
Gram stain and appearance (Table LRI-8) of sputum from a patient with suspected pneumonia can be helpful in presumptive determination of the cause of the pneumonia. Some pathogens Gram stain poorly or do not Gram stain, and if pneumonia is caused by one of the suspected pathogens, Dieterle silver stain (Legionella sp.), acid fast stain (Mycobacteria), or Gomori methenamine silver stain (fungi and Pneumocystis) should be ordered.
Table LRI-8. Sputum Appearance and Most Likely Cause or Type of Pneumonia |
|
Sputum Appearance |
Most Likely Cause or Type of Pneumonia |
Purulent |
Typical pneumonia |
Mucoid |
Interstitial pneumonia |
Rust color |
Streptococcus pneumoniae |
Green color |
Pseudomonas aeruginosa or Haemophilus influenzae |
Thick currant jelly-like |
Klebsiella pneumoniae |
Large amount of blood |
Cavitary tuberculosis and lung abscess |
Foul smelling |
Anaerobic bacterial pneumonia |
Additional laboratory tests that can aid in establishing a definitive diagnosis
Culture of the sputum.
Culture of blood samples for bacteria, fungi, or viruses.
Serology to detect antibodies produced against the pathogen or as a result of infection with the pathogen (e.g., cold agglutinins for Mycoplasma pneumoniae; detection of antibodies to the capsule of Streptococcus pneumoniae).
Antigen tests to detect certain antigens produced by the pathogen (e.g., polysaccharide testing for Streptococcus pneumoniae and Haemophilus influenzae).
Skin tests to detect delayed-type hypersensitivity reactions to certain pathogens (e.g., Mycobacterium tuberculosis: Mantoux test, Blastomyces dermatitidis, Histoplasma capsulatum, Coccidiodes immitis).
Polymerase chain reaction (PCR) performed on sputum samples to rapidly determine the cause of the pneumonia (e.g., tuberculosis).
Urinalysis for Legionella antigens.
Because most cases of pneumonias are caused by bacteria, treatment usually involves antibiotic therapy. Tables LRI-9 and LRI-10 list empiric treatment regimens for patients with pneumonia. In about one half of pneumonia patients, the etiologic agent can be determined and if the agent is known, more definitive therapy can be initiated.
Table LRI-9. Treatment of Pneumonia in Pediatric Patients by age or condition and Causative Agent |
||
Patient age or condition |
Causative agent |
Empiric therapy |
Neonatal pneumonia (birth to 1 month) |
Streptococcus agalactiae, Escherichia coli and other coliforms, Listeria, Staphylococcus aureus, Chlamydia trachomatis, Treponema pallidum |
Ampicillin + gentamicin ± cefotaxime; add vancomycin methicillin-resistant S aureus; if Chlamydia infection, treat with erythromycin |
Infants (1–3 months) |
Chlamydia trachomatis, Streptococcus pneumoniae |
Erythromycin or azithromycin S pneumoniae: ampicillin |
Children (4 months–5 years) |
Streptococcus pneumoniae, Haemophilus influenzae, Mycoplasma pneumoniae |
Outpatient: Amoxicillin Inpatient: Ampicillin intravenous Inpatient ICU: Cefotaxime If Mycoplasma is likely use clarithromycin or azithromycin. |
Children (5–15 years) |
Mycoplasma pneumoniae, Chlamydophila pneumoniae, S pneumoniae (uncommon) |
Outpatient: Clarithromycin or azithromycin Inpatient: Ceftriaxone + azithromycin |
Children with cystic fibrosis |
Staphylococcus aureus early in disease, Pseudomonas aeruginosa later in disease |
For S aureus: methicillin sensitive strains: oxacillin/nafcillin; methicillin-resistant strains: vancomycin For P aeruginosa: tobramycin + ticarcillin or piperacillin or tobramycin + ceftazine |
ICU, intensive care unit.
Table LRI-10. Treatment of Pneumonia in Adults by Causative Agent and Patient Characteristics |
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Patient Characteristics |
Causative Agent |
Empiric Therapy |
Viral pneumonia in adults |
Influenza virus, parainfluenza, adenovirus, RSV, hantavirus |
For influenza A and B: zanamivir or oseltamivir |
Community acquired; not hospitalized |
No comorbidity: Mycoplasma pneumoniae, Chlamydophila pneumoniae, viral, Streptococcus pneumoniae Smokers: Streptococcus pneumoniae, Haemophilus influenzae, Moraxella catarrhalis Postviral bronchitis: Streptococcus pneumonia, Staphylococcus aureus (rare) Alcoholic stupor: Streptococcus pneumoniae, Klebsiella pneumoniae and other coliforms, anaerobes (aspiration) IV drug abuse: Staphylococcus aureus Airway obstruction: Anaerobes |
Azithromycin or clarithromycin or fluoroquinolones with enhanced activity against S pneumoniae (moxifloxacin > gatifloxacin > sparfloxacin > levofloxacin) |
Community acquired; hospitalized |
No comorbidity |
Cephalexin + erythromycin or azithromycin or fluoroquinolones with enhanced activity against S pneumoniae |
Hospital acquired (nosocomial) |
Poststroke aspiration: Streptococcus pneumoniae, anaerobes Water colonization: Legionella sp. Organ failure: Coliforms Mechanical ventilation: Coliforms, Pseudomonas aeruginosa, Staphylococcus aureus; Steroid use: Yeast, Pneumocystis jiroveci |
To cover coliforms, S pneumoniae, and anaerobes: Imipenem or meropenem or piperacillin Pneumocystis jiroveci pneumonia can be treated with trimethoprim/ sulfamethoxazole Yeast infections can be treated with amphotericin B |
Aspiration pneumonia and lung abscess |
Bacteroides, Peptostreptococcus, Fusobacterium |
Clindamycin |
Chronic pneumonia with fever, night sweats, and weight loss |
Mycobacterium tuberculosis, coccidioidomycosis, histoplasmosis |
Pulmonary tuberculosis: isoniazid + rifampin + pyrazinamide Primary pneumonia due in coccidioidomycosis and histoplasmosis treatment is not usually recommended; if symptoms do not resolve within several weeks to 2 months, treat with itraconazole; for severe disease, treat with amphotericin B |
There are two vaccines that can be given to adults to help prevent pneumonia. The S pneumoniae vaccine contains 23 capsular types of the bacterial capsule and is used in persons older than age 65. The influenza vaccine should be given yearly to all persons older than age 65 to help prevent viral pneumonia or secondary bacterial pneumonia that may occur following infection with the influenza virus. Chemoprophylaxis to prevent influenza infections is helpful in preventing secondary bacterial pneumonia.
The conjugated S pneumoniae heptavalent vaccine is important in preventing infection with this organism in young children. The conjugated H influenzae type b (Hib) vaccine prevents childhood infections with H influenzae. Respiratory syncytial virus infections can be prevented in premature infants, neutropenic infants, or in infants with various comorbidities with a periodic injection of respiratory syncytial virus immune globulin or humanized mouse monoclonal antibody (palivizumab). Annual immunization of children with the influenza vaccine prevents influenza infections in vaccinated children and appears to prevent spread of the virus to close contacts that may be at high risk for adverse outcomes following this viral infection.
Send comments and email to Dr. Chamberlain, nchamberlain@atsu.edu